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21:29:12 - Welcome to quoFEM
21:29:18 - Loading example Forward Propagation - OpenSeesPy
21:29:18 - - reading input file /Users/sg/Desktop/quoFEM.app/Contents/MacOS/Examples/qfem-0002/src/input.json
21:29:18 - Loading Example file. Wait till Done Loading Example appears before progressing.
21:29:18 - Loading File .. /Users/sg/Desktop/quoFEM.app/Contents/MacOS/Examples/qfem-0002/src/input.json
21:29:18 - Done Loading File
21:29:18 - Done Loading Example.
21:29:51 - Setting up temporary directory.
21:29:51 - Gathering files to local workdir.
21:29:51 -
21:29:51 - SetUp Done .. Now starting application
21:29:51 - Starting the analysis. This may take awhile!
21:29:52 -
qWHALE workflow
System Information:
local time zone: PDT
start time: 2022-10-03T21:29:52
python: 3.9.13 (main, May 24 2022, 21:28:12)
[Clang 12.0.0 (clang-1200.0.32.29)]
numpy: 1.21.2
pandas: 1.3.4
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
21:29:52 Started running the workflow script
-----------------------------------------------------------------------
21:29:52 Inputs provided:
workflow input file: /Users/sg/Documents/quoFEM/LocalWorkDir/tmp.SimCenter/templatedir/scInput.json
application registry file: /Users/sg/Desktop/quoFEM.app/Contents/MacOS/applications/Workflow/WorkflowApplications.json
run type: runningLocal
-----------------------------------------------------------------------
21:29:52 Parsing application registry file
Loading the json file...
OK
Loading default values...
OK
Collecting application data...
OK
Available applications:
FEM : OpenSees
FEM : OpenSeesPy
FEM : SurrogateGP
FEM : FEAPpv
FEM : Custom
FEM : MultipleModels
UQ : Dakota-UQ
UQ : SimCenter-UQ
UQ : UCSD-UQ
UQ : Dakota-FEM
UQ : Dakota-UQ1
UQ : CustomUQ
Successfully parsed application registry
-----------------------------------------------------------------------
21:29:52 Parsing workflow input file
Loading the json file...
OK
No units specified; using Standard units.
Missing output type specification, using default settings.
{}
The following workflow defaults were overwritten:
workflowInput: scInput.json
Run dir : /Users/sg/Documents/quoFEM/LocalWorkDir/tmp.SimCenter
Local applications dir : /Users/sg/Desktop/quoFEM.app/Contents/MacOS
Remote applications dir : /Users/sg/Desktop/quoFEM.app/Contents/MacOS
Reference dir : None
Parsing the requested list of applications...
Requested workflow:
FEM : OpenSeesPy
UQ : Dakota-UQ
Successfully parsed workflow inputs
-----------------------------------------------------------------------
21:29:52 Initializing the simulation directory
Simulation directory successfully initialized.
-----------------------------------------------------------------------
21:29:52 Creating files with random variables
Running FEM app
"/Users/sg/Desktop/quoFEM.app/Contents/MacOS/applications/performFEM/OpenSeesPy/createOpenSeesPyDriver" "/Users/sg/Documents/quoFEM/LocalWorkDir/tmp.SimCenter/templatedir/scInput.json" "runningLocal" "MacOS" "driver"
Output:
Successfully Created Driver File for Workflow.
-----------------------------------------------------------------------
21:29:52 Running response simulation
FMK COMMAND: "/usr/local/opt/python@3.9/bin/python3.9" "/Users/sg/Desktop/quoFEM.app/Contents/MacOS/applications/performUQ/dakota/DakotaUQ.py" "--workflowInput" "scInput.json" "--driverFile" "driver" "--workflowOutput" "EDP.json" "--runType" "runningLocal"
Simulation command:
"/usr/local/opt/python@3.9/bin/python3.9" "/Users/sg/Desktop/quoFEM.app/Contents/MacOS/applications/performUQ/dakota/DakotaUQ.py" "--workflowInput" "scInput.json" "--driverFile" "driver" "--workflowOutput" "EDP.json" "--runType" "runningLocal"
Output:
P 30 20 2 2EVAL CONCURRENCY: 16
CWD: /Users/sg/Documents/quoFEM/LocalWorkDir/tmp.SimCenter/templatedir
running Dakota: dakota -input dakota.in -output dakota.out -error dakota.err
Response simulation finished successfully.
-----------------------------------------------------------------------
21:29:52 - Analysis done
21:29:52 - Error Running Dakota: Error: cannot open results file "workdir.1/results.out" for evaluation 1
21:29:52 - Analysis complete
../../../../../_images/FEM.pngand../../../../../_images/RV.pngthat are not loading properly.
As an example, UQpy has been implemented in the customized backend–the source code for the customized UqRunner class can be found in the SimCenterBackendApplications repository, linked here, and is also availble in the {Path to quoFEM app contents}/applications/performUQ/other directory.but the link is broken.
Contacting designsafe to Get Job Details of 7d8908ea-6cdc-45cb-8dd4-7c52c43ef455-007
Contacting designsafe to download remote file inputRWHALE.json
Successfully downloaded file
Contacting designsafe to download remote file input_data.zip
Successfully downloaded file
Contacting designsafe to download remote file hdf.zip
Successfully downloaded file
Loading example E2 - MDOF Building Response
This example uses ground motions from the 2018 earthquake in Anchorage, AK, to characterize the response of buildings with an idealized MDOF building model through story-level Engineering Demand Parameters (EDP). Exploiting the refinement in EDPs, a HAZUS-based story-level assessment is employed to evaluate the performance of 10 buildings.
Loading Example file. Wait till Done Loading appears before progressing.
Done loading. Click on the 'RUN' button to run an analysis.
Setting up temporary directory.
Gathering files to local workdir.
Setup done. Now starting application.
Starting the anlysis. This may take awhile!
An error occurred in the Python script, the exit code is 1
Analysis complete with errors
Sanjays-MBP2020:~ sg$ pip3 install nheri-simcenter
Collecting nheri-simcenter
Downloading nheri_simcenter-0.9.1-py3-none-any.whl (4.3 kB)
Collecting tqdm
Downloading tqdm-4.56.0-py2.py3-none-any.whl (72 kB)
|████████████████████████████████| 72 kB 4.2 MB/s
Collecting pandas<=1.1.5,>=1.1.0
Downloading pandas-1.1.5-cp39-cp39-macosx_10_9_x86_64.whl (10.3 MB)
|████████████████████████████████| 10.3 MB 20.7 MB/s
Collecting jpype1
Downloading JPype1-1.2.1-cp39-cp39-macosx_10_9_x86_64.whl (379 kB)
|████████████████████████████████| 379 kB 80.5 MB/s
Collecting sklearn
Downloading sklearn-0.0.tar.gz (1.1 kB)
Collecting xlrd<=1.2.0
Downloading xlrd-1.2.0-py2.py3-none-any.whl (103 kB)
|████████████████████████████████| 103 kB 75.7 MB/s
Collecting tables
Downloading tables-3.6.1.tar.gz (4.6 MB)
|████████████████████████████████| 4.6 MB 83.6 MB/s
ERROR: Command errored out with exit status 1:
command: /usr/local/opt/python@3.9/bin/python3.9 -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/private/var/folders/9d/rzw8lm7100923j8xf9bllgpc0000gn/T/pip-install-ssk3fkux/tables/setup.py'"'"'; __file__='"'"'/private/var/folders/9d/rzw8lm7100923j8xf9bllgpc0000gn/T/pip-install-ssk3fkux/tables/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' egg_info --egg-base /private/var/folders/9d/rzw8lm7100923j8xf9bllgpc0000gn/T/pip-pip-egg-info-epxvhxqs
cwd: /private/var/folders/9d/rzw8lm7100923j8xf9bllgpc0000gn/T/pip-install-ssk3fkux/tables/
Complete output (10 lines):
/var/folders/9d/rzw8lm7100923j8xf9bllgpc0000gn/T/H5close9tul_kdb.c:2:5: error: implicit declaration of function 'H5close' is invalid in C99 [-Werror,-Wimplicit-function-declaration]
H5close();
^
1 error generated.
* Using Python 3.9.0 (default, Nov 21 2020, 14:01:50)
* USE_PKGCONFIG: True
.. ERROR:: Could not find a local HDF5 installation.
You may need to explicitly state where your local HDF5 headers and
library can be found by setting the ``HDF5_DIR`` environment
variable or by using the ``--hdf5`` command-line option.
----------------------------------------
ERROR: Command errored out with exit status 1: python setup.py egg_info Check the logs for full command output.
wmake
ln: ./lnInclude
Making dependency list for source file digitalFilterFvPatchVectorField.C
Making dependency list for source file syntheticEddyFvPatchVectorField.C
wmkdepend: could not open 'triSurface.H' for source file 'syntheticEddy/syntheticEddyFvPatchVectorField.C': No such file or directory
Making dependency list for source file eddyIO.C
Making dependency list for source file eddy.C
g++ -std=c++11 -m64 -DOPENFOAM=1912 -DWM_DP -DWM_LABEL_SIZE=32 -Wall -Wextra -Wold-style-cast -Wnon-virtual-dtor -Wno-unused-parameter -Wno-invalid-offsetof -Wno-attributes -Wno-unknown-pragmas -O3 -DNoRepository -ftemplate-depth-100 -I/opt/OpenFOAM/OpenFOAM-v1912/src/triSurface/lnInclude -I/opt/OpenFOAM/OpenFOAM-v1912/src/meshTools/lnInclude -I/opt/OpenFOAM/OpenFOAM-v1912/src/finiteVolume/lnInclude -IlnInclude -I. -I/opt/OpenFOAM/OpenFOAM-v1912/src/OpenFOAM/lnInclude -I/opt/OpenFOAM/OpenFOAM-v1912/src/OSspecific/POSIX/lnInclude -fPIC -c eddy/eddy.C -o Make/linux64GccDPInt32Opt/eddy/eddy.o
In file included from /opt/OpenFOAM/OpenFOAM-v1912/src/OpenFOAM/lnInclude/Random.H:342:0,
from eddy/eddy.H:42,
from eddy/eddy.C:26:
/opt/OpenFOAM/OpenFOAM-v1912/src/OpenFOAM/lnInclude/RandomI.H: In member function 'Foam::scalar Foam::eddy::epsi(Foam::Random&) const':
/opt/OpenFOAM/OpenFOAM-v1912/src/OpenFOAM/lnInclude/RandomI.H:30:21: error: 'Foam::scalar Foam::Random::scalar01()' is private
inline Foam::scalar Foam::Random::scalar01()
^
In file included from eddy/eddy.H:233:0,
from eddy/eddy.C:26:
eddy/eddyI.H:32:28: error: within this context
return rndGen.scalar01() > 0.5 ? 1 : -1;
^
make: *** [Make/linux64GccDPInt32Opt/eddy/eddy.o] Error 1